I did actually pull the boots off of both coils and cleaned everything up with electronics cleaner before I reassembled it. I believe there may have been a slight crack on one of the coils, but the fact that the same cylinder misfired after I switched the coils makes me think that's not the culprit. I also bought a new coil "just in case" with the intention of returning it if I don't need it.

01 Convertible; Electric Fan; 3" Up Your Kia lift spacers; Tj 104's; 31x10.5x15's on Centerlines; Rear LSD.
GONE, all I have left are a few spare parts and the wheels.