Did you put on a 4.3 TBI with the swap? MY old TBI from the 2.8 wouldn't run the 3.4
It only got better when I put the TBI from the 4.3 on.
After that, check the vacuum hoses and such.
Shouldn't need another ECM


'91 Trooper
3.4 V6, K&N, 33x12.5 Trxus MT's, Aisin hubs, 3" body lift, Rear ARB Naches Trail